HL_6OSK_025

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUCAACCCGACUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSK_025 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3063

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OSK|1|1|G|881
6OSK|1|1|G|882
6OSK|1|1|G|883
6OSK|1|1|U|884
6OSK|1|1|C|885
6OSK|1|1|A|886
6OSK|1|1|A|887
6OSK|1|1|C|888
6OSK|1|1|C|889
6OSK|1|1|C|890
6OSK|1|1|G|891
6OSK|1|1|A|892
6OSK|1|1|C|893
6OSK|1|1|U|894
6OSK|1|1|U|895

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13