HL_6OSK_039

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

6OSK|1|1|A|1614, 6OSK|1|1|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSK_039 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1326

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6OSK|1|1|C|1612
6OSK|1|1|G|1613
6OSK|1|1|A|1614
6OSK|1|1|C|1615
6OSK|1|1|A|1616
6OSK|1|1|C|1617
6OSK|1|1|6MZ|1618
6OSK|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34