HL_6OT3_104
3D structure
- PDB id
- 6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RF2 accommodated state bound Release complex 70S at 24 ms
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 6OT3|1|5|G|18, 6OT3|1|5|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OT3_104 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.2262
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6OT3|1|5|C|12
6OT3|1|5|A|13
6OT3|1|5|G|14
6OT3|1|5|C|15
6OT3|1|5|C|16
6OT3|1|5|U|17
6OT3|1|5|G|18
6OT3|1|5|G|19
6OT3|1|5|H2U|20
6OT3|1|5|A|21
6OT3|1|5|G|22
Current chains
- Chain 5
- P-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
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