HL_6OTR_043

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6OTR|1|RA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_043 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0742

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6OTR|1|RA|G|194
6OTR|1|RA|A|195
6OTR|1|RA|A|196
6OTR|1|RA|A|197
6OTR|1|RA|C|198
6OTR|1|RA|A|199
6OTR|1|RA|U|200
6OTR|1|RA|C|201

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15