HL_6OTR_070

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_070 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.0699

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6OTR|1|RA|C|1223
6OTR|1|RA|G|1224
6OTR|1|RA|C|1225
6OTR|1|RA|G|1226
6OTR|1|RA|A|1227
6OTR|1|RA|G|1228

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21