HL_6OTR_115

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6OTR|1|XA|U|208, 6OTR|1|XA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_115 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.254

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6OTR|1|XA|C|201
6OTR|1|XA|U|208
6OTR|1|XA|U|209
6OTR|1|XA|U|210
6OTR|1|XA|G|216

Current chains

Chain XA

16S rRNA

Nearby chains