HL_6OTR_119

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6OTR|1|XA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_119 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2886

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

6OTR|1|XA|C|342
6OTR|1|XA|U|343
6OTR|1|XA|A|344
6OTR|1|XA|C|345
6OTR|1|XA|G|346
6OTR|1|XA|G|347

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YO

50S ribosomal protein L14

Chain YT

50S ribosomal protein L19