HL_6OTR_177

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6OTR|1|YA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_177 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3917

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OTR|1|YA|C|1064
6OTR|1|YA|U|1065
6OTR|1|YA|U|1066
6OTR|1|YA|A|1067
6OTR|1|YA|G|1068
6OTR|1|YA|A|1069
6OTR|1|YA|A|1070
6OTR|1|YA|G|1071
6OTR|1|YA|C|1072
6OTR|1|YA|A|1073
6OTR|1|YA|G|1074

Current chains

Chain YA

23S rRNA

Nearby chains