3D structure

PDB id
6OTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
CCUUGG
Length
6 nucleotides
Bulged bases
6OTR|1|QA|U|189, 6OTR|1|QA|G|190
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OTR_221 not in the Motif Atlas
Homologous match to HL_4LFB_004
Geometric discrepancy: 0.238
The information below is about HL_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89167.1
Basepair signature
cWW-F-F
Number of instances in this motif group
20

Unit IDs

6OTR|1|QA|C|186|||F
6OTR|1|QA|C|187
6OTR|1|QA|U|188
6OTR|1|QA|U|189
6OTR|1|QA|G|190
6OTR|1|QA|G|191|||A

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QQ
30S ribosomal protein S17
Chain QT
30S ribosomal protein S20

Coloring options:


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