HL_6OUO_011

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6OUO|1|1|G|329, 6OUO|1|1|A|330, 6OUO|1|1|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OUO_011 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1606

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

6OUO|1|1|G|327
6OUO|1|1|U|328
6OUO|1|1|G|329
6OUO|1|1|A|330
6OUO|1|1|C|331
6OUO|1|1|A|332
6OUO|1|1|G|333
6OUO|1|1|C|334
6OUO|1|1|C|335

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24