HL_6OXA_012

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

6OXA|1|QA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2414

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OXA|1|QA|C|458
6OXA|1|QA|G|464
6OXA|1|QA|A|465
6OXA|1|QA|C|466
6OXA|1|QA|G|467
6OXA|1|QA|A|468
6OXA|1|QA|G|474

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16