HL_6OXA_023

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

6OXA|1|QA|G|1029, 6OXA|1|QA|C|1030, 6OXA|1|QA|G|1031, 6OXA|1|QA|A|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_023 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3148

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6OXA|1|QA|C|1028
6OXA|1|QA|C|1028|||A
6OXA|1|QA|C|1028|||B
6OXA|1|QA|G|1029
6OXA|1|QA|C|1030
6OXA|1|QA|G|1031
6OXA|1|QA|A|1032
6OXA|1|QA|G|1032|||A
6OXA|1|QA|G|1032|||B
6OXA|1|QA|G|1033

Current chains

Chain QA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA