HL_6OXA_026

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6OXA|1|QA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3015

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6OXA|1|QA|G|1134
6OXA|1|QA|U|1135
6OXA|1|QA|U|1136
6OXA|1|QA|C|1137
6OXA|1|QA|G|1138
6OXA|1|QA|G|1139
6OXA|1|QA|C|1140

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9