HL_6OXA_062

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6OXA|1|RA|A|781, 6OXA|1|RA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_062 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3762

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6OXA|1|RA|U|779
6OXA|1|RA|G|780
6OXA|1|RA|A|781
6OXA|1|RA|A|782
6OXA|1|RA|A|783
6OXA|1|RA|A|784
6OXA|1|RA|G|785

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2