HL_6OXA_088

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6OXA|1|RA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_088 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1688

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6OXA|1|RA|G|1949
6OXA|1|RA|G|1950
6OXA|1|RA|U|1951
6OXA|1|RA|A|1952
6OXA|1|RA|A|1953
6OXA|1|RA|G|1954
6OXA|1|RA|U|1955
6OXA|1|RA|U|1956
6OXA|1|RA|C|1957

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14