HL_6OXA_118

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_118 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0879

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OXA|1|XA|C|320
6OXA|1|XA|A|321
6OXA|1|XA|C|322
6OXA|1|XA|U|323
6OXA|1|XA|G|324
6OXA|1|XA|A|325
6OXA|1|XA|G|326
6OXA|1|XA|A|327
6OXA|1|XA|C|328
6OXA|1|XA|A|329
6OXA|1|XA|C|330
6OXA|1|XA|G|331
6OXA|1|XA|G|332
6OXA|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20