HL_6OXA_142

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_142 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0892

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OXA|1|XA|C|1515
6OXA|1|XA|G|1516
6OXA|1|XA|G|1517
6OXA|1|XA|A|1518
6OXA|1|XA|A|1519
6OXA|1|XA|G|1520

Current chains

Chain XA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA