HL_6OXA_183

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6OXA|1|YA|U|1396, 6OXA|1|YA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_183 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0988

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OXA|1|YA|G|1389
6OXA|1|YA|U|1390
6OXA|1|YA|U|1391
6OXA|1|YA|A|1392
6OXA|1|YA|A|1393
6OXA|1|YA|U|1394
6OXA|1|YA|A|1395
6OXA|1|YA|U|1396
6OXA|1|YA|U|1397
6OXA|1|YA|C|1398

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YX

50S ribosomal protein L23