HL_6OXA_207

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6OXA|1|YA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_207 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0817

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6OXA|1|YA|C|2404
6OXA|1|YA|G|2405
6OXA|1|YA|U|2406
6OXA|1|YA|G|2407
6OXA|1|YA|U|2408
6OXA|1|YA|G|2409
6OXA|1|YA|G|2410
6OXA|1|YA|A|2411
6OXA|1|YA|A|2412
6OXA|1|YA|G|2413

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15