HL_6OXA_226

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCCCGCGAGGGG

Length

12 nucleotides

Bulged bases

6OXA|1|XA|G|1029, 6OXA|1|XA|C|1030, 6OXA|1|XA|G|1031, 6OXA|1|XA|A|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXA|1|XA|C|1027
6OXA|1|XA|C|1028
6OXA|1|XA|C|1028|||A
6OXA|1|XA|C|1028|||B
6OXA|1|XA|G|1029
6OXA|1|XA|C|1030
6OXA|1|XA|G|1031
6OXA|1|XA|A|1032
6OXA|1|XA|G|1032|||A
6OXA|1|XA|G|1032|||B
6OXA|1|XA|G|1033
6OXA|1|XA|G|1034

Current chains

Chain XA

16S rRNA

Nearby chains