HL_6OXA_227
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OXA_227 not in the Motif Atlas
- Homologous match to HL_4WZD_209
- Geometric discrepancy: 0.203
- The information below is about HL_4WZD_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OXA|1|XW|G|30
6OXA|1|XW|G|31
6OXA|1|XW|C|32
6OXA|1|XW|U|33
6OXA|1|XW|C|34
6OXA|1|XW|A|35
6OXA|1|XW|U|36
6OXA|1|XW|A|37
6OXA|1|XW|A|38
6OXA|1|XW|C|39
6OXA|1|XW|C|40
Current chains
- Chain XW
- P-site tRNA-fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
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