HL_6OXI_053

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

6OXI|1|RA|U|614, 6OXI|1|RA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_053 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.2406

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6OXI|1|RA|C|611
6OXI|1|RA|G|612
6OXI|1|RA|U|613
6OXI|1|RA|U|614
6OXI|1|RA|G|615
6OXI|1|RA|A|616
6OXI|1|RA|G|617

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4