HL_6OXI_061

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_061 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.2864

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

6OXI|1|RA|C|884
6OXI|1|RA|C|885
6OXI|1|RA|C|886
6OXI|1|RA|A|887
6OXI|1|RA|C|888
6OXI|1|RA|C|889
6OXI|1|RA|A|890
6OXI|1|RA|G|892

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QZ

Addiction module toxin, Txe/YoeB family