HL_6OXI_133

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6OXI|1|XA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_133 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3043

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6OXI|1|XA|G|1134
6OXI|1|XA|U|1135
6OXI|1|XA|U|1136
6OXI|1|XA|C|1137
6OXI|1|XA|G|1138
6OXI|1|XA|G|1139
6OXI|1|XA|C|1140

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9