HL_6OXI_147

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6OXI|1|YA|U|157

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_147 not in the Motif Atlas

Homologous match to HL_7RQB_005

Geometric discrepancy: 0.4264

The information below is about HL_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXI|1|YA|C|155
6OXI|1|YA|U|156
6OXI|1|YA|U|157
6OXI|1|YA|U|170
6OXI|1|YA|G|171

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28