HL_6OXI_178
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6OXI|1|YA|U|1396, 6OXI|1|YA|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OXI_178 not in the Motif Atlas
- Homologous match to HL_5J7L_168
- Geometric discrepancy: 0.0815
- The information below is about HL_5J7L_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81545.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6OXI|1|YA|G|1389
6OXI|1|YA|U|1390
6OXI|1|YA|U|1391
6OXI|1|YA|A|1392
6OXI|1|YA|A|1393
6OXI|1|YA|U|1394
6OXI|1|YA|A|1395
6OXI|1|YA|U|1396
6OXI|1|YA|U|1397
6OXI|1|YA|C|1398
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YX
- 50S ribosomal protein L23
Coloring options: