HL_6P4G_001

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGGAAAUUUCCAAUAAACUC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4G|1|1|G|6442
6P4G|1|1|A|6443
6P4G|1|1|G|6444
6P4G|1|1|G|6445
6P4G|1|1|A|6446
6P4G|1|1|A|6447
6P4G|1|1|A|6448
6P4G|1|1|U|6449
6P4G|1|1|U|6450
6P4G|1|1|U|6451
6P4G|1|1|C|6452
6P4G|1|1|C|6453
6P4G|1|1|A|6454
6P4G|1|1|A|6455
6P4G|1|1|U|6456
6P4G|1|1|A|6457
6P4G|1|1|A|6458
6P4G|1|1|A|6459
6P4G|1|1|C|6460
6P4G|1|1|U|6461
6P4G|1|1|C|6462

Current chains

Chain 1

IAPV-IRES

Nearby chains