HL_6P4G_040

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGUUCAGC

Length

9 nucleotides

Bulged bases

6P4G|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4G|1|2|G|1459
6P4G|1|2|C|1460
6P4G|1|2|G|1461
6P4G|1|2|U|1462
6P4G|1|2|U|1463
6P4G|1|2|C|1464
6P4G|1|2|A|1465
6P4G|1|2|G|1466
6P4G|1|2|C|1467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1