HL_6P4H_034

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4H_034 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3604

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6P4H|1|2|C|1460
6P4H|1|2|G|1461
6P4H|1|2|U|1462
6P4H|1|2|U|1463
6P4H|1|2|C|1464
6P4H|1|2|A|1465
6P4H|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1