HL_6P4H_037

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

6P4H|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4H_037 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2746

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6P4H|1|2|G|1658
6P4H|1|2|U|1659
6P4H|1|2|C|1660
6P4H|1|2|A|1661
6P4H|1|2|U|1662
6P4H|1|2|A|1663
6P4H|1|2|A|1664
6P4H|1|2|G|1665
6P4H|1|2|C|1666

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain e

eS29