HL_6P5I_005

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|1|G|6584
6P5I|1|1|G|6585
6P5I|1|1|U|6586
6P5I|1|1|A|6587
6P5I|1|1|A|6588
6P5I|1|1|C|6589
6P5I|1|1|A|6590
6P5I|1|1|C|6591

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AI

uL16