HL_6P5I_048
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6P5I|1|5|G|315, 6P5I|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5I_048 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.1979
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6P5I|1|5|G|314
6P5I|1|5|G|315
6P5I|1|5|U|316
6P5I|1|5|A|317
6P5I|1|5|A|318
6P5I|1|5|A|319
6P5I|1|5|C|320
6P5I|1|5|U|321
6P5I|1|5|C|322
6P5I|1|5|C|323
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AN
- eL15
- Chain Aa
- uL15
- Chain Ai
- eL36
- Chain Ao
- eL42
Coloring options: