HL_6P5I_065
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGAAACGAU
- Length
- 11 nucleotides
- Bulged bases
- 6P5I|1|5|C|1763
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5I_065 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.39
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5I|1|5|G|1761
6P5I|1|5|C|1762
6P5I|1|5|C|1763
6P5I|1|5|G|1764
6P5I|1|5|A|1765
6P5I|1|5|A|1766
6P5I|1|5|A|1767
6P5I|1|5|C|1768
6P5I|1|5|G|1769
6P5I|1|5|A|1770
6P5I|1|5|U|1771
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain AJ
- uL11
- Chain Q
- uS19
- Chain T
- uS13
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