HL_6P5I_069
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGGCCAUGGAAGUCGGAAUC
- Length
- 21 nucleotides
- Bulged bases
- 6P5I|1|5|G|1985, 6P5I|1|5|U|1986
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5I|1|5|G|1973
6P5I|1|5|U|1974
6P5I|1|5|G|1975
6P5I|1|5|G|1976
6P5I|1|5|C|1977
6P5I|1|5|C|1978
6P5I|1|5|A|1979
6P5I|1|5|U|1980
6P5I|1|5|G|1981
6P5I|1|5|G|1982
6P5I|1|5|A|1983
6P5I|1|5|A|1984
6P5I|1|5|G|1985
6P5I|1|5|U|1986
6P5I|1|5|C|1987
6P5I|1|5|G|1988
6P5I|1|5|G|1989
6P5I|1|5|A|1990
6P5I|1|5|A|1991
6P5I|1|5|U|1992
6P5I|1|5|C|1993
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain AI
- uL16
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