HL_6P5I_071
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 6P5I|1|5|C|2094, 6P5I|1|5|C|2099, 6P5I|1|5|A|2107, 6P5I|1|5|C|2260, 6P5I|1|5|U|2267, 6P5I|1|5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5I|1|5|C|2087
6P5I|1|5|A|2088
6P5I|1|5|G|2089
6P5I|1|5|U|2090
6P5I|1|5|C|2091
6P5I|1|5|G|2092
6P5I|1|5|G|2093
6P5I|1|5|C|2094
6P5I|1|5|A|2095
6P5I|1|5|G|2096
6P5I|1|5|A|2097
6P5I|1|5|G|2098
6P5I|1|5|C|2099
6P5I|1|5|G|2100
6P5I|1|5|A|2101
6P5I|1|5|G|2102
6P5I|1|5|A|2103
6P5I|1|5|A|2104
6P5I|1|5|A|2105
6P5I|1|5|G|2106
6P5I|1|5|A|2107
6P5I|1|5|G|2108
6P5I|1|5|A|2109
6P5I|1|5|G|2110
6P5I|1|5|U|2111
6P5I|1|5|G|2112
6P5I|1|5|G|2113
6P5I|1|5|C|2258
6P5I|1|5|G|2259
6P5I|1|5|C|2260
6P5I|1|5|G|2261
6P5I|1|5|G|2262
6P5I|1|5|A|2263
6P5I|1|5|C|2264
6P5I|1|5|G|2265
6P5I|1|5|C|2266
6P5I|1|5|U|2267
6P5I|1|5|A|2268
6P5I|1|5|C|2269
6P5I|1|5|G|2270
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AE
- eL6
- Chain AF
- uL30
- Chain AQ
- eL18
- Chain Ab
- eL29
- Chain Ae
- eL32
- Chain Ar
- eL28
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