HL_6P5I_127

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCCGG

Length

7 nucleotides

Bulged bases

6P5I|1|5|C|4859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5I_127 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3767

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5I|1|5|C|4774
6P5I|1|5|C|4775
6P5I|1|5|G|4776
6P5I|1|5|C|4777
6P5I|1|5|C|4859
6P5I|1|5|G|4860
6P5I|1|5|G|4861

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AH

uL6

Chain AM

L14e

Chain AO

uL13