HL_6P5N_001

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAUUUCCAAUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|1|G|6444
6P5N|1|1|G|6445
6P5N|1|1|A|6446
6P5N|1|1|A|6447
6P5N|1|1|A|6448
6P5N|1|1|U|6449
6P5N|1|1|U|6450
6P5N|1|1|U|6451
6P5N|1|1|C|6452
6P5N|1|1|C|6453
6P5N|1|1|A|6454
6P5N|1|1|A|6455
6P5N|1|1|U|6456
6P5N|1|1|A|6457
6P5N|1|1|A|6458
6P5N|1|1|A|6459
6P5N|1|1|C|6460

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain G

uS7