HL_6P5N_020

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGGCCGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_020 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3744

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6P5N|1|2|G|694
6P5N|1|2|C|695
6P5N|1|2|G|696
6P5N|1|2|G|697
6P5N|1|2|C|729
6P5N|1|2|C|730
6P5N|1|2|G|731
6P5N|1|2|U|732
6P5N|1|2|C|733

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain X

uS8