HL_6P5N_035

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCGG

Length

6 nucleotides

Bulged bases

6P5N|1|2|C|1417

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_035 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3149

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6P5N|1|2|C|1415
6P5N|1|2|C|1416
6P5N|1|2|C|1417
6P5N|1|2|C|1423
6P5N|1|2|G|1424
6P5N|1|2|G|1425

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19