HL_6P5N_038

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

6P5N|1|2|U|1621, 6P5N|1|2|U|1622, 6P5N|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|G|1613
6P5N|1|2|A|1614
6P5N|1|2|U|1615
6P5N|1|2|U|1616
6P5N|1|2|G|1617
6P5N|1|2|C|1618
6P5N|1|2|A|1619
6P5N|1|2|A|1620
6P5N|1|2|U|1621
6P5N|1|2|U|1622
6P5N|1|2|A|1623
6P5N|1|2|U|1624
6P5N|1|2|U|1625
6P5N|1|2|C|1626

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain U

eS19

Chain e

eS29