HL_6P5N_040

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGGGUGCCCUGG

Length

13 nucleotides

Bulged bases

6P5N|1|2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|C|1756
6P5N|1|2|G|1757
6P5N|1|2|G|1758
6P5N|1|2|G|1759
6P5N|1|2|G|1760
6P5N|1|2|U|1761
6P5N|1|2|G|1771
6P5N|1|2|C|1772
6P5N|1|2|C|1773
6P5N|1|2|C|1774
6P5N|1|2|U|1775
6P5N|1|2|G|1776
6P5N|1|2|G|1777

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6