HL_6P5N_062

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6P5N|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_062 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2896

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5N|1|5|G|1479
6P5N|1|5|C|1480
6P5N|1|5|C|1481
6P5N|1|5|G|1482
6P5N|1|5|C|1483
6P5N|1|5|G|1484
6P5N|1|5|C|1485
6P5N|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AL

eL13

Chain Ai

eL36