HL_6P5N_103

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_103 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1375

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6P5N|1|5|C|4270
6P5N|1|5|A|4271
6P5N|1|5|G|4272
6P5N|1|5|A|4273
6P5N|1|5|A|4274
6P5N|1|5|G|4275
6P5N|1|5|G|4276
6P5N|1|5|G|4277

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AI

uL16

Chain AT

eL21

Chain Ao

eL42