HL_6P5N_113
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6P5N|1|5|G|4694, 6P5N|1|5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5N_113 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0896
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6P5N|1|5|C|4688
6P5N|1|5|U|4689
6P5N|1|5|G|4690
6P5N|1|5|A|4691
6P5N|1|5|A|4692
6P5N|1|5|C|4693
6P5N|1|5|G|4694
6P5N|1|5|C|4695
6P5N|1|5|C|4696
6P5N|1|5|U|4697
6P5N|1|5|C|4698
6P5N|1|5|U|4699
6P5N|1|5|A|4700
6P5N|1|5|A|4701
6P5N|1|5|G|4702
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AH
- uL6
- Chain AO
- uL13
- Chain Am
- eL40
Coloring options: