HL_6P5N_130
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5N_130 not in the Motif Atlas
- Homologous match to HL_8CRE_210
- Geometric discrepancy: 0.1078
- The information below is about HL_8CRE_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6P5N|1|2|A|957
6P5N|1|2|G|958
6P5N|1|2|G|959
6P5N|1|2|U|960
6P5N|1|2|G|961
6P5N|1|2|A|962
6P5N|1|2|A|963
6P5N|1|2|A|964
6P5N|1|2|U|965
6P5N|1|2|U|966
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- uS7
- Chain P
- uS11
- Chain b
- eS26
Coloring options: