HL_6P5N_131

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

6P5N|1|5|C|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|5|G|1760
6P5N|1|5|G|1761
6P5N|1|5|C|1762
6P5N|1|5|C|1763
6P5N|1|5|G|1764
6P5N|1|5|A|1765
6P5N|1|5|A|1766
6P5N|1|5|A|1767
6P5N|1|5|C|1768
6P5N|1|5|G|1769
6P5N|1|5|A|1770
6P5N|1|5|U|1771
6P5N|1|5|C|1772

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13