HL_6P7M_001

3D structure

PDB id

6P7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (1:2 complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAGUG

Length

7 nucleotides

Bulged bases

6P7M|1|B|A|11, 6P7M|1|B|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P7M_001 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.0913

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6P7M|1|B|C|9
6P7M|1|B|U|10
6P7M|1|B|A|11
6P7M|1|B|A|12
6P7M|1|B|G|13
6P7M|1|B|U|14
6P7M|1|B|G|15

Current chains

Chain B

mature crRNA

Nearby chains

Chain A

Cas12a

Chain C

anti-CRISPR VA4