HL_6PC5_016

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6PC5|1|I|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC5_016 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.3294

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|G|543
6PC5|1|I|C|544
6PC5|1|I|U|545
6PC5|1|I|U|546
6PC5|1|I|A|547
6PC5|1|I|G|548
6PC5|1|I|G|549
6PC5|1|I|C|550

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13