HL_6PC5_036

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PC5|1|I|G|1452, 6PC5|1|I|A|1453, 6PC5|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC5_036 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1304

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6PC5|1|I|C|1451
6PC5|1|I|G|1452
6PC5|1|I|A|1453
6PC5|1|I|C|1454
6PC5|1|I|G|1455
6PC5|1|I|G|1456
6PC5|1|I|U|1457
6PC5|1|I|U|1458
6PC5|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains