HL_6PC5_038

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

6PC5|1|I|A|1535, 6PC5|1|I|G|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC5_038 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3835

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6PC5|1|I|A|1532
6PC5|1|I|C|1533
6PC5|1|I|U|1534
6PC5|1|I|A|1535
6PC5|1|I|C|1536
6PC5|1|I|G|1537
6PC5|1|I|G|1538
6PC5|1|I|U|1539

Current chains

Chain I

23S ribosomal RNA

Nearby chains